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MEA pipeline 1.10.2 documentation
MEA pipeline 1.10.2 documentation

MATLAB pipeline:

  • Setting up MATLAB
  • Setting up MEA-NAP
  • Guide for New Users
  • Guide for Advanced Users
  • Running MEA-NAP on High-Performance Computing (HPC)
  • MEA-NAP Methods
  • MEA-NAP Outputs
  • System Requirements
  • Frequently Asked Questions
  • Contributing to the Project
  • Code Sources
  • Citing MEA-NAP

Python pipeline:

  • MEA-NAP for Python
    • Installation
    • Quickstart
    • GUI guide
    • CAT-NAP (calcium imaging)
    • Network Viewer
    • Tutorial: driving the network-plotting API directly
    • Output report
    • MATLAB vs. Python: what’s ported, what’s approximate, what’s missing
    • API reference
      • meanap.params
      • meanap.network_plot
      • meanap.pipeline
        • meanap.pipeline.burst_detection
        • meanap.pipeline.cancellation
        • meanap.pipeline.channel_layout
        • meanap.pipeline.example_data
        • meanap.pipeline.firing_rates
        • meanap.pipeline.io
        • meanap.pipeline.louvain
        • meanap.pipeline.modularity
        • meanap.pipeline.network_metrics
        • meanap.pipeline.nmf
        • meanap.pipeline.null_models
        • meanap.pipeline.output_folders
        • meanap.pipeline.parula
        • meanap.pipeline.plotting
        • meanap.pipeline.plotting_step2
        • meanap.pipeline.plotting_step4
        • meanap.pipeline.probabilistic_threshold
        • meanap.pipeline.report
        • meanap.pipeline.runner
        • meanap.pipeline.spike_detection
        • meanap.pipeline.spreadsheet
        • meanap.pipeline.step2
        • meanap.pipeline.step3
        • meanap.pipeline.step4
        • meanap.pipeline.sttc
      • meanap.catnap
        • meanap.catnap.denoising
        • meanap.catnap.loader
        • meanap.catnap.scanner
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